Author

Jeevitha C M

@jeevithacm21

The tools behind RNA-Seq: HISAT2, DESeq2, and Others

Previously, I described the RNA-seq pipeline as moving through four steps: quality control, alignment, quantification, and differential…

Apr 13, 2026 · 5 min read · 4 claps #bioinformatics #jeevithacm #rna-seq

We have spent this week learning how to sequence DNA.

May 08, 2026 · 5 min read · 1 claps #bioinformatics #snp #data-science

BIO GEN

We have covered a lot of sequencing ground this week.

Apr 27, 2026 · 5 min read · 1 claps #sanger-sequencing #jeevithacm21 #bioinformatics

BIO GEN

We have spent the last few days going deep into RNA-seq, if you haven’t checked, see the previous writeups. The pipeline. The tools. The…

Apr 22, 2026 · 5 min read · 1 claps #bioinformatics #biology #computational-biology

You have run your quality control. You have aligned your reads. You have counted them. You have run DESeq2, and you have a results table…

Apr 18, 2026 · 4 min read · 1 claps #biotechnology #bioinformatics #jeevithacm

My honest opinion on the most fundamental tool in bioinformatics and the three ways people get it completely wrong.

Mar 15, 2026 · 6 min read · 0 claps #blast #bioinformatics #jeevithacm

Here is a question I want you to sit with for a moment. Two cells. Same organism. Same DNA. Same genome sequence.

Apr 09, 2026 · 5 min read · 0 claps #bioinformatics #biology #qpcr

BIO SCI

Getting results is the easy part. Understanding what they are telling you biologically, that is what the real work is.

Mar 17, 2026 · 4 min read · 0 claps #blast #bioinformatics #jeevithacm