#scrna-seq

When Should You Subcluster a Single-Cell RNA-seq Cluster? A Practical Decision Framework

UMAP is not biology. A split on a UMAP embedding does not automatically justify creating new cell populations.

Your Complete Single-Cell RNA-seq Analysis Pipeline

Executable Seurat Tutorial: From Raw Data to Cell Clusters

Single-Cell RNA-seq Walkthrough: How I Mapped Cell-Type-Specific Regulatory Networks Across…

From raw gene expression matrices to cell-type-specific regulatory networks: A step-by-step computational walkthrough

I’ve been tinkering with a small side project called Cherchoux — a playful experiment exploring…

In demos, Cherchoux can:

My Week 3 at HackBio Learning Single-Cell Analysis with Scanpy

Week Two at HackBio: The Week I Finally Felt Like a Data Scientist

Last year, while working on my MSc project, everything I visualized came from Excel. And honestly, it looked good. If you know me, you know…

Transformer-based LLMs can Outperform Standard ML Approaches in Single-Cell RNAseq Annotation

Abstract

Graph Embeddings: Understanding the System for Their Generation

Part 3 of a 3-part series on understanding embeddings

🔍 Biyoinformatik Yolculuğuna Başlamak için Uygulamalı ve Kapsamlı Udemy Eğitimleri

Günümüzde biyolojik verilerin hacmi her geçen gün artarken, bu verileri anlamlandırmak ve analiz etmek için biyoinformatik hiç olmadığı…

Overcoming Bioinformatics Skill Gaps in Single-Cell Research

A guide to overcoming bioinformatics skill gap in single-cell research faced by wet-lab scientists in analyzing scRNA-seq and omics data.

The best metaphor for spatial transcriptomics

How everyone can understand what is spatial transcriptomics

Some Notes on the Triumphs and Limitations of Computational Methods for scRNA-seq

Navigating the Landscape of Computational Methods in scRNA-seq

Seurat Single Cell Analysis Tool Kit Version 5

A workaround to use Seurat v5 with other R/python packages

Live on BioRxiv: Methods Paper on scMultiome Multiome Data Analysis in SciDAP

How to guide for 10x scMultiome, scRNA-seq and scATAC-seq data analysis in SciDAP: Cell Ranger, Seaurat, Harmony, doublet finder and…

scRNA Filtering and Normalization with Scanpy

As single-cell RNA (scRNA) sequencing data is becoming more and more abundant in the realm of bioinformatics, the ability to analyze and…

Perbandingan analisis scRNA-seq dengan metode sctransform dan analisis standar menggunakan Seurat

Halo semua. Saya Ivana Sitepu seorang Intern di bidang penelitian bioinformatika sejak pertengahan bulan september di BGI Research…

The single cell mess at NCBI: how GEO/SRA store 10x Genomics scRNA-seq data and how to load them…

10x Genomics single cell workflow

The Easiest Way for Biologists to Explore Their NGS Data

Next generation sequencing (NGS) generates so much data that analysis is struggling to keep up. Analysis relies on trained data scientists…

[같이실습] Single Cell RNA Sequencing #3 — Exercise (1)

Single Cell RNA Sequencing Exercise: SingleCellExperiment of Bioconductor

[같이실습] Single Cell RNA Sequencing #2 — Technologies (2)

Single Cell RNA Sequencing Technologies: QC Step

[같이실습] Single Cell RNA Sequencing #1 — Technologies (1)

Single Cell RNA Sequencing Technologies: Two Challenges

[같이실습] Single Cell RNA Sequencing #0 — Background

Single Cell RNA Sequencing Background: Why Single Cell?